Best wishes on this rather unique project! I myself have done some "1946" campaign editing, though with the more modest premise of "what if France were never liberated and the French bases were unmolested through the end of the war?" I have one piece of advice for you:
Adding, removing, and generally editing naval bases in the LND layer has sometimes caused the dreaded "vertical gauges" bug for me. It's quite a time-consuming issue to test for, since it manifests only after loading saves. Use caution! Everything can look fine in tests, only for this bug to ruin everything once you finally start a career.
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