On looking back through both shots of the files, am seeing that both [Time Compression] sections, do indeed match up... odd... as this should resolve the dreaded "Game Paused" bug...
It has, on the rare times that I have ran into it, at any rate.
M. M.
Edit: post reply:
On doing some looking, have never gotten My copy of SH3 from protonDB...
Mine are from the sources of Steam & Ubisoft.
It ould be, that this is the root cause... maybe.
It could be a glitched install from there... & it may call for a uninstall & reinstall... is the only thing I can think to do.
If that doesn't do it... then the only thing I can think of... is, to look into getting SH3 from another source, other than from protonDB there...