Equinox: To disable waveriding, exit the mission and go to the options screen from the main title. It is on the "game" tab. But, it's not going to help you...
Bill: The FFG isn't getting pushed into the dock. It's grounded. Apparently 1.04 increased the draft of the FFG.
Edit: SCS Confirms that 1.04 corrected the draft of the FFG from the previous model.