Empty the Save folder after you activate the mod. When you play the stock game, even just the Sub School to test your install, you are populating the Save folder with stock game files. You have to empty the Save folder before playing the modded game, else it won't add all of the mod's files, and you end up with a confused mix of a game, that quite possibly could CTD, besides graphics and operational anomalies.
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"...and bollocks to the naysayer/s" - Jimbuna
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