I found out something interesting. In my c:\users\user_name\ folder, there are two "my documents" folders. One of them is windows system controlled folder that mirrors exactly the other one. So every time, a folder is created in the regular "my documents" folder, there would be a copy in the system one. I wasn't able to access it first cuz it was system controlled. So probably, when I first deleted the old save folder, something lingered in the system folder. I changed the access permission that now I can access that system controller folder. Also, I reinstalled everything from stock game to mod. Erased every trace of SH4 pre-install. Hopefully, this time that save issue would be gone. But fingers crossed.
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